How to implement Clustalw in Perl Program

[rajcdfd]

Please be kind to suggest how to implement clustalw in a perl program.
What all steps I need to follow.

Also , I have referred to Bioperl.
But I faced a lot of uneasy for finding the path and some packages which the programs used to decline.
Also it asks for the same error many time after installing the bioperl with full modules.

" Can't locate Bio/Factory/EMBOSS.pm in @INC (@INC contains: /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at msa3.pl line 9.
BEGIN failed--compilation aborted at msa3.pl line 9. "

It couldn't get it .

Please say me how to link bioperl packages or how to make clustalw executable and give the path to run it in perl program.

Thanks

[westerman]

A better place for help on installing BioPerl is the BioPerl wiki.

http://www.bioperl.org/wiki/Installing_BioPerl

Follow those instructions. If they do not work then give them feedback as they suggest.

[SES]

The module you are trying to use (Bio::Factory::EMBOSS) is not a part of the core BioPerl. You will need to install the BioPerl-Run package to use it, and you can do that from CPAN or Github.