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    started a topic What kind of software for ChIP-seq analysis?

    What kind of software for ChIP-seq analysis?

    Hello,

    I'm a trainee and I have to analyze chip-seq data from illumina.
    MACS is the software selected by my boss. I plan to use both CisGenome and MACS in order to compare them for my internship presentation. But, I want you to tell me if it should be better to compare MACS with an other software and why.

    Thanks guys!
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