There are many tools for predicting miRNA targets. Does something like that exist for lncRNAs?
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I have found only this:
Recent studies demonstrating the existence of special noncoding "antisense" RNAs used in post transcriptional gene regulation have received considerable attention. These RNAs are synthesized naturally to control gene expression in C. elegans, Drosophila, and other organisms; they are known to regula …
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Any update on that?
I've got a list of potential ncRNAs, but have no idea what to do next. It looks like most people do over-expression/knockdown experiments to identify ncRNA targets, but that's not feasible for a list of 100-200 ncRNAs...
Any help or suggestions would be highly appreciated!
Thanks,
Jeannine
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