I'm analyzing antibodies and I'm using IGBlastn standalone for it. I have created my own database using makeblastdb. When running it gives the error Segmentation fault (core dumped). Does anyone know how to fix this?
thanks
thanks
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how to create your own database using makeblastdb by IGblastn
there are too many parameters in igblast ,so I am not sure the way to make a database for igblast ,I have downloaded the all of IGHV,D,J, TRB,D,A,G from IMGT ,
-germline_db_V database/mouse_gl_V
-germline_db_J database/mouse_gl_J
-germline_db_D database/mouse_gl_D
-organism mouse
-domain_system imgt
-ig_seqtype Ig
-query $id
-auxiliary_data
optional_file/mouse_gl.aux
-show_translation -outfmt 7
-out $id.blast_result
-num_threads 13
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