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Greetings!
I am using EdgeR to perform analysis on a large dataset. For some of my questions, I am interested in looking only at a subset of my data, based on a specific field in the dataset. Is it possible to filter out the unwanted samples based on the data in a specific group?
For example
In the below example, I would like to include only samples from location L1
My DGEList
$counts
N1 N2 N3...
0 4 6 8
1 5 2 1
2 3 7 9
3 0 0 1
...
$samples
group lib.size ...
N1 L1 13661
N2 L2 14228
N3 L1 20557
...
Any assistance is appreciated!
I am using EdgeR to perform analysis on a large dataset. For some of my questions, I am interested in looking only at a subset of my data, based on a specific field in the dataset. Is it possible to filter out the unwanted samples based on the data in a specific group?
For example
In the below example, I would like to include only samples from location L1
My DGEList
$counts
N1 N2 N3...
0 4 6 8
1 5 2 1
2 3 7 9
3 0 0 1
...
$samples
group lib.size ...
N1 L1 13661
N2 L2 14228
N3 L1 20557
...
Any assistance is appreciated!