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  • golharam
    replied
    As far as I'm aware of, yes. The filename is slightly different, one replace .bam with .bai while the other add .bai to the end of .bam.

    Leave a comment:


  • emolinari
    started a topic Samtools index vs Picard sortsam!

    Samtools index vs Picard sortsam!

    Hi guys,

    a small question: what is the difference of a .bai file obtained from Samtools index vs Picard SortSam???

    Is it the same thing?

    Thanks!

    Manu

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