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  • JManuelMonroyKuhn
    Member
    • Oct 2014
    • 25

    Installation error BLAT

    I tried to install BLAT but at the end I got this error

    make[1]: Leaving directory `/home/hpc/uj502/di29kiz/blatSrc/jkOwnLib'
    cd blat && make
    make[1]: Entering directory `/home/hpc/uj502/di29kiz/blatSrc/blat'
    gcc -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64-suse-linux -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blat.o -c blat.c
    <command-line>:0:16: warning: missing whitespace after the macro name
    gcc -O -g -o /home/hpc/uj502/di29kiz/bin/x86_64-suse-linux/blat blat.o ../lib/x86_64-suse-linux/jkOwnLib.a ../lib/x86_64-suse-linux/jkweb.a -pthread -lm
    /usr/bin/ld: cannot open output file /home/hpc/uj502/di29kiz/bin/x86_64-suse-linux/blat: No such file or directory
    collect2: error: ld returned 1 exit status
    make[1]: *** [blat] Error 1
    make[1]: Leaving directory `/home/hpc/uj502/di29kiz/blatSrc/blat'
    make: *** [all] Error 2

    Any help I'll appreciate! Thank you
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    That looks like only a warning. Are there other parts of log that you did not post?

    I assume you are at an academic institution so why not try the pre-compiled version here: http://hgdownload.cse.ucsc.edu/admin/exe/

    Comment

    • JManuelMonroyKuhn
      Member
      • Oct 2014
      • 25

      #3
      Hello!
      I just solve it! I just had to do a directory ~/bin/x86_64-suse-linux. Very easy and basic! Thanks!

      Comment

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