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  • Francy87
    Member
    • May 2013
    • 28

    #1

    fold change for rna seq data without replicates

    Hi all!
    I have bacterial metatranscriptome from 12 samples but I don't have any biological replicates. They are a time serie (1 sample for each time point).

    I know that for differential expression analysis I would need replicates, but at the moment we can't afford that.

    I'd like at least to be able to say if there is a higher or lower expression of some genes during the time.

    Anyone can suggest me how to proceed?
    How can I normalize the gene counts for sequencing depth and calculate which genes are up or down-regulated between each couple of samples?

    Thanks a mil
    francesca

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