Hi all:
I am trying to re-analyzed a CLIP-SEQ dataset, downloaded from GEO: SRR048973(GSM545212)
After downloading the sra file (unaligned), I used fastq-dump to converse this file into fastq format.
Can/Should I now use Bowtie to generate aligned SAM file ?
Thanks in advance!
Best,
I am trying to re-analyzed a CLIP-SEQ dataset, downloaded from GEO: SRR048973(GSM545212)
After downloading the sra file (unaligned), I used fastq-dump to converse this file into fastq format.
Can/Should I now use Bowtie to generate aligned SAM file ?
Thanks in advance!
Best,