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  • peerah
    Junior Member
    • Jan 2015
    • 6
    #1

    Online tool to calculate percent global identity between draft genomes

    Hi,

    Is there an online tool where I could upload draft genomes (multi-fasta format containing contig sequences) to do a pairwise comparison and come up with a global percent identity? I tried local BLAST, but I only got the percent identity for each of the matching regions and not a global value. Or is there a way to get that from BLAST?

    Thank you so much!

    P
    Tags: None
    • GenoMax
      Senior Member
      • Feb 2008
      • 7142
      #2
      Bacterial genomes?

        Comment

        • peerah
          Junior Member
          • Jan 2015
          • 6
          #3
          Yes. Sorry I forgot to mention that in the first place. Size is about 5 Mbp.

            Comment

            • GenoMax
              Senior Member
              • Feb 2008
              • 7142
              #4
              Mauve should have something: http://darlinglab.org/mauve/mauve.html

                Comment

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