Online tool to calculate percent global identity between draft genomes

[peerah]

Hi,

Is there an online tool where I could upload draft genomes (multi-fasta format containing contig sequences) to do a pairwise comparison and come up with a global percent identity? I tried local BLAST, but I only got the percent identity for each of the matching regions and not a global value. Or is there a way to get that from BLAST?

Thank you so much!

P

[GenoMax]

Bacterial genomes?

[peerah]

Yes. Sorry I forgot to mention that in the first place. Size is about 5 Mbp.

[GenoMax]

Mauve should have something: http://darlinglab.org/mauve/mauve.html