Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • luxmare
    Member
    • Feb 2009
    • 11

    #1

    Cufflinks on Solaris (compile error)

    I want to install Cufflinks (the latest version 0.8.2) on Solaris 10 server.

    I've already installed Boost C++ libraries Version 1.43.0 on the system. But I faced to the following errors when I compiled Cufflinks.

    Does anyone known how to solve this problem? Cuffliks can work on Solaris system?


    ---- A part of error messages ----

    bash$ make
    all-recursive
    make[1]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2'
    Making all in src
    make[2]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2/src'
    if g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -Wall -Wno-strict-aliasing -g -gdwarf-2 -m64 -O3 -DNDEBUG -I/home/user/Boost/boost_1_43_0/include -MT clustering.o -MD -MP -MF ".deps/clustering.Tpo" -c -o clustering.o clustering.cpp; \
    then mv -f ".deps/clustering.Tpo" ".deps/clustering.Po"; else rm -f ".deps/clustering.Tpo"; exit 1; fi
    In file included from /home/user/Boost/boost_1_43_0/include/boost/thread/detail/platform.hpp:17,
    from /home/user/Boost/boost_1_43_0/include/boost/thread/thread.hpp:12,
    from /home/user/Boost/boost_1_43_0/include/boost/thread.hpp:13,
    from scaffolds.h:22,
    from abundances.h:21,
    from clustering.h:32,
    from clustering.cpp:10:
    /home/user/Boost/boost_1_43_0/include/boost/config/requires_threads.hpp:47:5: #error "Compiler threading support is not turned on. Please set the correct command line options for threading: -pthread (Linux), -pthreads (Solaris) or -mthreads (Mingw32)”

    --- skip ---


    FYI:

    Boost C++ libraries Version 1.43.0 was installed in /home/user/Boost/boost_1_43_0/ by using the following command.

    bash$ bjam --prefix=/home/user/Boost/boost_1_43_0/ toolset=gcc link=static runtime-link=static stage install

    After that I also configured Cufflinks like this

    bash$ ./configure --prefix=/home/user/Cufflinks/ --with-boost=/home/user/Boost/boost_1_43_0/
  • dawe
    Senior Member
    • Apr 2009
    • 258

    #2
    Hi, I was trying to install on Nexenta, apparently I have a plenty of other errors not related to threads (system #include and #define instead).
    BTW, I've built boost like this

    Code:
    $ ./bootstrap.sh --prefix=/usr/local
    $ ./bjam --toolset=gcc --build-dir=~/buildboost stage
    $ sudo ./bjam install
    It skips 6 modules (I think python ones).

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM
    • SEQadmin2
      New Genomics Technologies Take Aim at Long-Standing Limits
      by SEQadmin2


      Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

      We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
      ...
      09-28-2026, 10:25 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 10-15-2026, 10:52 AM
    0 responses
    28 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-14-2026, 05:39 AM
    0 responses
    36 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-13-2026, 09:56 AM
    0 responses
    31 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-09-2026, 11:14 AM
    0 responses
    29 views
    0 reactions
    Last Post SEQadmin2  
    Working...