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  • Cufflinks on Solaris (compile error)

    I want to install Cufflinks (the latest version 0.8.2) on Solaris 10 server.

    I've already installed Boost C++ libraries Version 1.43.0 on the system. But I faced to the following errors when I compiled Cufflinks.

    Does anyone known how to solve this problem? Cuffliks can work on Solaris system?


    ---- A part of error messages ----

    bash$ make
    all-recursive
    make[1]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2'
    Making all in src
    make[2]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2/src'
    if g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -Wall -Wno-strict-aliasing -g -gdwarf-2 -m64 -O3 -DNDEBUG -I/home/user/Boost/boost_1_43_0/include -MT clustering.o -MD -MP -MF ".deps/clustering.Tpo" -c -o clustering.o clustering.cpp; \
    then mv -f ".deps/clustering.Tpo" ".deps/clustering.Po"; else rm -f ".deps/clustering.Tpo"; exit 1; fi
    In file included from /home/user/Boost/boost_1_43_0/include/boost/thread/detail/platform.hpp:17,
    from /home/user/Boost/boost_1_43_0/include/boost/thread/thread.hpp:12,
    from /home/user/Boost/boost_1_43_0/include/boost/thread.hpp:13,
    from scaffolds.h:22,
    from abundances.h:21,
    from clustering.h:32,
    from clustering.cpp:10:
    /home/user/Boost/boost_1_43_0/include/boost/config/requires_threads.hpp:47:5: #error "Compiler threading support is not turned on. Please set the correct command line options for threading: -pthread (Linux), -pthreads (Solaris) or -mthreads (Mingw32)”

    --- skip ---


    FYI:

    Boost C++ libraries Version 1.43.0 was installed in /home/user/Boost/boost_1_43_0/ by using the following command.

    bash$ bjam --prefix=/home/user/Boost/boost_1_43_0/ toolset=gcc link=static runtime-link=static stage install

    After that I also configured Cufflinks like this

    bash$ ./configure --prefix=/home/user/Cufflinks/ --with-boost=/home/user/Boost/boost_1_43_0/

  • #2
    Hi, I was trying to install on Nexenta, apparently I have a plenty of other errors not related to threads (system #include and #define instead).
    BTW, I've built boost like this

    Code:
    $ ./bootstrap.sh --prefix=/usr/local
    $ ./bjam --toolset=gcc --build-dir=~/buildboost stage
    $ sudo ./bjam install
    It skips 6 modules (I think python ones).

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