Header Leaderboard Ad

Collapse

defuse -d option

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • defuse -d option

    Dear all,

    I'm trying to run defuse on an sge cluster where defuse was installed and used already by others.
    Below is the command I tried:
    sge defuse.pl -c /lspans0/config.txt -1 /lspans0/GC011094.R1.fastq -2 /lspans0/GC011094.R2.fastq -o /lspans0/defuse_out/

    Do I need to explicitly use the ' -s sge' option?
    In some places, people say that you should add the -d parameter (being the source_data_directory).
    Is this the case, or should the command work as I tried it? Then I would suspect that there is something wrong with the reference files that are being used.

    Thanks for any suggestions,
    Lien

Latest Articles

Collapse

  • seqadmin
    How RNA-Seq is Transforming Cancer Studies
    by seqadmin



    Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
    09-07-2023, 11:15 PM
  • seqadmin
    Methods for Investigating the Transcriptome
    by seqadmin




    Ribonucleic acid (RNA) represents a range of diverse molecules that play a crucial role in many cellular processes. From serving as a protein template to regulating genes, the complex processes involving RNA make it a focal point of study for many scientists. This article will spotlight various methods scientists have developed to investigate different RNA subtypes and the broader transcriptome.

    Whole Transcriptome RNA-seq
    Whole transcriptome sequencing...
    08-31-2023, 11:07 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 06:18 AM
0 responses
5 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-20-2023, 09:17 AM
0 responses
8 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-19-2023, 09:23 AM
0 responses
25 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-19-2023, 09:14 AM
0 responses
7 views
0 likes
Last Post seqadmin  
Working...
X