Splitting the fasta file into 2 columns

[dena.dinesh]

Hi,

I have read the fasta file using "read.fasta" from "seqinr" pacakge. The file like like as follows:

>dg_TM_254_2_1
MASDHAGUWHJAHSHHGAZAGHSGBAHSHGASHJAJAWWQWDSDASJDHKHASK
ASDASDGASJGZDSGDDHASDHASGD
>dg_TM_656_2_1
MJIAKJIEQWIHAASDASJDHASHDKJASDWQOWIOQIWQLAJLSJWIOQUZZEWASD
>dg_TM_543_1_2
MUZTREQWERNBVXCYMNMVHZTOPOPOEURDASDOPOQWEUZQUIZRZIRIEIWUEWASDHASHDAHSDHAKHHSDHASHDJASHDAHUWIEUROWUOERUOWEUROOWWWW
>dg_TM_212_0_2
MQWUEGSPOZBYCVDVRFTEVWBVRVRVVSDSZTTASDZUZUZUZUADUS

I would like split the file into the names of the sequence in one column and the corresponding the sequence in another column. I tried like creating data.frame and adding names of fasta_sequences in column and the corresponding sequences in another column, but it failed in R

Can anyone please guide me.

Thanks in advance

[dpryan]

Assuming the output of read.fasta() is an object "f"

data.frame(Fragments=names(f), Seqs=unlist(getSequence(f, as.string=T)))

[dena.dinesh]

Assuming the output of read.fasta() is an object "f"

data.frame(Fragments=names(f), Seqs=unlist(getSequence(f, as.string=T)))

Thanks Ryan..It worked.