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  • snp_analyser
    Junior Member
    • Jun 2010
    • 4

    Cufflinks sample file(test_data.sam) output

    I installed boost 1_43_0 and then cufflinks version 0.8.2 on my server. I'm testing the version of cufflinks that I compiled from source on the sample file from the cufflinks website (http://cufflinks.cbcb.umd.edu/tutorial.html).

    I'm getting the following output on my screen:

    -bash-3.2$ ./cufflinks test_data.sam
    Counting hits in map
    Total map density: 104.000000
    Processing bundle [ test_chromosome:52-550 ] with 99 non-redundant alignments

    Is this output right? It doesn't match the output in the tutorial page mentioned above.

    Thanks

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