I am looking for a tool that can take my BAM files and spit out the following information:
1. Mean depth across the entire genome
2. Percent of genome covered at a specified depth, or preferably multiple specified depths (i.e. 10X, 20X, 30X etc).
I'm not a great command line jockey, so a tool that can be installed in Galaxy would be great, but if not, then I can muddle my way through it on the command line.
Thanks!
1. Mean depth across the entire genome
2. Percent of genome covered at a specified depth, or preferably multiple specified depths (i.e. 10X, 20X, 30X etc).
I'm not a great command line jockey, so a tool that can be installed in Galaxy would be great, but if not, then I can muddle my way through it on the command line.
Thanks!
Comment