Hello everybody,
I'm trying to use mrsFast however I get this error :
ERR: Inconsistent read length for @NS500354:3:H052NAFXX:1:11101:21889:1027
Of course my reads do not have all the same size because I trimmed it :
grep -A 1 "@NS500354:3:H052NAFXX:1:11101:21889:1027" *fastq
allReads_R1.fastq:@NS500354:3:H052NAFXX:1:11101:21889:1027 1:N:0:TAAGGC
allReads_R1.fastq-NTACANCACTGTGTATGAAACTATGTGCTTAACTTCATGAAATCCTACT
--
allReads_R2.fastq:@NS500354:3:H052NAFXX:1:11101:21889:1027 2:N:0:TAAGGC
allReads_R2.fastq-NNNNAGGATTTCNNNANGTTAAGCACATAGNNNCATACACNGTGTTGTATCTGNNTCTNNNACACATCTGACGCNNNCGNNNNTCTTACGCGTGTAGANNNNNGNGNTCGCCGTATCNTNNANAANAAANGGGGGGGGGGGGGNGNNNNG
Does this error mean all my reads have to have the same length or am I doing something wrong ?
Thanks
I'm trying to use mrsFast however I get this error :
ERR: Inconsistent read length for @NS500354:3:H052NAFXX:1:11101:21889:1027
Of course my reads do not have all the same size because I trimmed it :
grep -A 1 "@NS500354:3:H052NAFXX:1:11101:21889:1027" *fastq
allReads_R1.fastq:@NS500354:3:H052NAFXX:1:11101:21889:1027 1:N:0:TAAGGC
allReads_R1.fastq-NTACANCACTGTGTATGAAACTATGTGCTTAACTTCATGAAATCCTACT
--
allReads_R2.fastq:@NS500354:3:H052NAFXX:1:11101:21889:1027 2:N:0:TAAGGC
allReads_R2.fastq-NNNNAGGATTTCNNNANGTTAAGCACATAGNNNCATACACNGTGTTGTATCTGNNTCTNNNACACATCTGACGCNNNCGNNNNTCTTACGCGTGTAGANNNNNGNGNTCGCCGTATCNTNNANAANAAANGGGGGGGGGGGGGNGNNNNG
Does this error mean all my reads have to have the same length or am I doing something wrong ?
Thanks
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