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  • How install cufflinks in the server

    I need install cufflinks in the server. The server is university high performance computer, so I don't have root authority. When I follow the instruction from cufflinks website (http://cole-trapnell-lab.github.io/c...tting_started/), I'm confused (I'm new user of Linux). So I have no idea about how to install SAM and Eigen, those folders are not existing in my account, how could I fix it out?
    Here is my fold:
    /home/svu/smrhoj/NGStool/

    Thanks.

  • #2
    Download the pre-compiled binary from here: http://cole-trapnell-lab.github.io/c..._x86_64.tar.gz

    No install will be needed: http://cole-trapnell-lab.github.io/c...binary-release Adjust $PATH variable as needed.

    If you are not familiar with command line take a look at this guide for unix basics for biologists: http://korflab.ucdavis.edu/Unix_and_...ent.html#part1

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    • #3
      You may want to put a ticket in to see if the admins will install this (and other NGS software) on the cluster. It may already be there if there are others who do NGS at your university. If it is not already installed, it would make sense to have this installed centrally so every user does not need to do it in their own account.

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