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  • papori
    Senior Member
    • Dec 2010
    • 181

    #1

    Downloading TrEMBL

    Hi all,
    Does anyone know why when im trying to download from uniprot
    UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.

    the TrEMBL dataset with wget like this:
    wget ftp://ftp.uniprot.org/pub/databases/...rembl.fasta.gzit always stop at 1.6GB ~15%... ??

    with this message:
    Control connection closed.
    and then retry from the begining..

    Thanks,
    Pap
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Are you behind a firewall? See if the options in this thread help: http://superuser.com/questions/44545...one-connection

    Comment

    • papori
      Senior Member
      • Dec 2010
      • 181

      #3
      Originally posted by GenoMax View Post
      Are you behind a firewall? See if the options in this thread help: http://superuser.com/questions/44545...one-connection
      Hi GenoMax!

      I tried both:
      --no-passive-ftp
      --retry-connrefused --waitretry=30

      and still the same problem..

      Comment

      • GenoMax
        Senior Member
        • Feb 2008
        • 7142

        #4
        This must be some sort of local timeout issue. I am able to get the file with wget. Give lftp or curl a try instead.

        Comment

        • papori
          Senior Member
          • Dec 2010
          • 181

          #5
          Originally posted by GenoMax View Post
          This must be some sort of local timeout issue. I am able to get the file with wget. Give lftp or curl a try instead.
          Thanks Genomax,
          I tried curl and it also didnt work.
          I think our server ftp protocol is too old....
          I am trying to download in different computer..
          Thanks,
          Pap

          Comment

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