Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • papori
    Senior Member
    • Dec 2010
    • 181

    #1

    Downloading TrEMBL

    Hi all,
    Does anyone know why when im trying to download from uniprot
    UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.

    the TrEMBL dataset with wget like this:
    wget ftp://ftp.uniprot.org/pub/databases/...rembl.fasta.gzit always stop at 1.6GB ~15%... ??

    with this message:
    Control connection closed.
    and then retry from the begining..

    Thanks,
    Pap
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Are you behind a firewall? See if the options in this thread help: http://superuser.com/questions/44545...one-connection

    Comment

    • papori
      Senior Member
      • Dec 2010
      • 181

      #3
      Originally posted by GenoMax View Post
      Are you behind a firewall? See if the options in this thread help: http://superuser.com/questions/44545...one-connection
      Hi GenoMax!

      I tried both:
      --no-passive-ftp
      --retry-connrefused --waitretry=30

      and still the same problem..

      Comment

      • GenoMax
        Senior Member
        • Feb 2008
        • 7142

        #4
        This must be some sort of local timeout issue. I am able to get the file with wget. Give lftp or curl a try instead.

        Comment

        • papori
          Senior Member
          • Dec 2010
          • 181

          #5
          Originally posted by GenoMax View Post
          This must be some sort of local timeout issue. I am able to get the file with wget. Give lftp or curl a try instead.
          Thanks Genomax,
          I tried curl and it also didnt work.
          I think our server ftp protocol is too old....
          I am trying to download in different computer..
          Thanks,
          Pap

          Comment

          Latest Articles

          Collapse

          • SEQadmin2
            16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
            by SEQadmin2




            NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
            Today, 06:46 AM
          • SEQadmin2
            Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
            by SEQadmin2



            Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

            Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
            ...
            10-14-2026, 09:55 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by SEQadmin2, 10-28-2026, 09:57 AM
          0 responses
          22 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 10-28-2026, 09:51 AM
          0 responses
          14 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 10-22-2026, 11:13 AM
          0 responses
          67 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 10-22-2026, 10:48 AM
          0 responses
          47 views
          0 reactions
          Last Post SEQadmin2  
          Working...