Coding Potential Calculator

[ctard]

Hi all !

I've been using CPC for a while and I've just recently noticed their website is down, I can't make the script work with Linux

I was wondering, do you experience the same problem with their platorm ? How come they closed it ?

What do you do then to assess the coding potential of your transcripts ?

Thanks so much !

Best,

Claire

[darked89]

The CPC site is up again. And the info about installation is here:

http://cpc.cbi.pku.edu.cn/docs/install_guide.jsp

I have not used it on the command line for a while but remember that some input and/or output file names were hard-coded in the scripts. Plus because it uses blast, there may be issues between i.e. blastall vs blast+ branches.