Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Where can I find sequence reads?

    Hi~~

    Where can I download sequence reads directly? (without installing applications; like ftp)

    I want small cDNA reads to test TopHat and cufflinks fast. I tried to design a file with a few reads but because there is bias, the quality of my reads are so low.

    Thank you..

  • #2
    Most web browsers offer direct FTP support via:

    ftp://username[email protected]

    I realize that you are in Iran and thus may have a more limited web browser but I suggest trying out your web browser first before writing off FTP

    As for where to get the reads, I suggest the SRA at NCBI but it does depend on what organism you want. NCBI does like to use Aspera as a download method but you should be able to step around that.

    Comment


    • #3
      @Saeideh: If you are unable to use the download methods then try "randomreads.sh" program from BBMap suite. You can provide it a fasta reference to generate random reads with characteristics you can control: http://seqanswers.com/forums/showthread.php?t=48988

      Comment

      Latest Articles

      Collapse

      • seqadmin
        The Impact of AI in Genomic Medicine
        by seqadmin



        Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
        02-26-2024, 02:07 PM
      • seqadmin
        Multiomics Techniques Advancing Disease Research
        by seqadmin


        New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

        A major leap in the field has
        ...
        02-08-2024, 06:33 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 02-28-2024, 06:12 AM
      0 responses
      27 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 02-23-2024, 04:11 PM
      0 responses
      74 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 02-21-2024, 08:52 AM
      0 responses
      81 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 02-20-2024, 08:57 AM
      0 responses
      69 views
      0 likes
      Last Post seqadmin  
      Working...
      X