File conversion on CisGenome

[ninino]

Hi,

I am a newcomer to the HTS field and would like to analyze some ChIP-seq experiments using CisGenome with a GUI on a Windows OS. I got stuck at the beginning, when I tried to convert my BED files to the ALN format required by the program. There is a file conversion tool provided by the program, but this didn't work, even if I installed the software exactly as explained in the program tutorial. Did anybody get the same problem and has suggestions for me?

Thanks,

[litd]

the problem is the alignment format. cisgenome only works for the old format of eland result, not the sorted etc ones. please paste a part of alignment file here.

[litd]

or you can use commands to convert the file.