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  • amjadcsu
    Junior Member
    • Nov 2015
    • 3
    #1

    pMap software using bowtie for profiling/benchmark

    Hello,

    I am trying to use pMap software with bowtie for compartive genomics.

    I am a HPC specialist and would like to show the use of MPI for Dna sequencing.

    Any one have experience running pMap on a Linux cluster?



    Thank you
    Tags: None
  • dpryan
    Devon Ryan
    • Jul 2011
    • 3478
    #2
    I've never used pMap myself and I'm not sure how well maintained it is (bowtie is rather out-dated and I don't see that they support bowtie2). If you just want to show that "alignment is faster with multiple nodes" then you can try bison.

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