Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • Naina
    Junior Member
    • Feb 2016
    • 1

    #1

    Velveth help

    I ran ~/mypath/velveth Assem 21 -shortPaired -fastq -separate clean_1.fq clean_2.fq

    and got:

    velveth: Can't malloc 181 chars: Cannot allocate memory
    Aborted (core dumped)

    I clearly have RAM and 1.2TB of space available.

    What can I do? Thanks in advance

    UPDATE: it worked by itself after awhile

    however when I tried velvetg for the first time, I got seg fault (core dumped)

    UPDATE: now I'm getting killed
    Last edited by Naina; 02-02-2016, 04:25 PM.
  • Brian Bushnell
    Super Moderator
    • Jan 2014
    • 2709

    #2
    You may be running out of memory. How much do you have, and how much is the program using (you can see this with the command 'top' while it is running).

    Comment

    Latest Articles

    Collapse

    • kinpict.com
      Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
      by kinpict.com
      The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
      Today, 06:37 PM
    • SEQadmin2
      16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
      by SEQadmin2





      NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
      10-30-2026, 06:46 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 11-12-2026, 07:59 AM
    0 responses
    27 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 11-05-2026, 09:25 AM
    0 responses
    35 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 11-03-2026, 11:54 AM
    2 responses
    56 views
    0 reactions
    Last Post kinpict.com  
    Started by SEQadmin2, 10-28-2026, 09:57 AM
    0 responses
    175 views
    0 reactions
    Last Post SEQadmin2  
    Working...