Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Velveth help

    I ran ~/mypath/velveth Assem 21 -shortPaired -fastq -separate clean_1.fq clean_2.fq

    and got:

    velveth: Can't malloc 181 chars: Cannot allocate memory
    Aborted (core dumped)

    I clearly have RAM and 1.2TB of space available.

    What can I do? Thanks in advance

    UPDATE: it worked by itself after awhile

    however when I tried velvetg for the first time, I got seg fault (core dumped)

    UPDATE: now I'm getting killed
    Last edited by Naina; 02-02-2016, 04:25 PM.

  • #2
    You may be running out of memory. How much do you have, and how much is the program using (you can see this with the command 'top' while it is running).

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Latest Developments in Precision Medicine
      by seqadmin



      Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

      Somatic Genomics
      “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
      05-24-2024, 01:16 PM
    • seqadmin
      Recent Advances in Sequencing Analysis Tools
      by seqadmin


      The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
      05-06-2024, 07:48 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, Yesterday, 01:32 PM
    0 responses
    10 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 05-24-2024, 07:15 AM
    0 responses
    199 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 05-23-2024, 10:28 AM
    0 responses
    221 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 05-23-2024, 07:35 AM
    0 responses
    232 views
    0 likes
    Last Post seqadmin  
    Working...
    X