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  • ester
    replied
    I tried running maqindex with maq output from versions 0.6.8 and 0.7.1, in either case there is a segmentation error

    %maqindex -i -c consensus.cns all.map
    -- Indexing the alignment file 'all.map' ... Segmentation fault

    Can anybody help?

    Leave a comment:


  • xuer
    replied
    I got a "Segmentation fault" error when i tried
    ./maqindex -v input.map chrI:1-200

    or ./maqindex -i input.map.


    Is there anybody could help me?

    Leave a comment:


  • ECO
    replied
    I've had this error when trying to use a newer version of maqview to view .map files from older versions of maq.

    Leave a comment:


  • cgjkjk
    replied
    Yes, I did.
    Also ran ./zrio make XXXXX.map

    Leave a comment:


  • ECO
    replied
    Did you index the map with maqindex -c XXXX.cns YYYY.map ?

    Leave a comment:


  • cgjkjk
    started a topic How to use MAQVIEW?

    How to use MAQVIEW?

    Hi,
    I use this MAQVIEW command "./maqview alo1564.map", to display the alignment. but system replies:

    "freeglut (./maqview):unable to creat direct context rendering for window 'M.A.Q View'.
    This may hurt performance.
    Cannot open view on alo1564.map"


    Is there anyone know what wrong is?

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