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  • Mona
    Member
    • Feb 2010
    • 27
    #1

    Errors using consed

    Hi,
    I have got a 454 data, and I have performed its denovo assembly. I am trying to perform gap closure using consed. When i run the consed and try to load the ace file, it loads the file but with the error: could not open phd file. ../phd dir/F33GYHM02GEz27.phd.1.
    And secondly when i try to open the chromatogram of a particular read, it gives me error: Unable to find chromatogram file ../chromat_dir/sff:F33GYHM02.sff:"read name".
    I have checked the installation and there isn't any problem with the installation, its working well with the test data and I have also checked my data on some other system where consed was running well. I dont know how to stop getting this message.
    Any one please help.
    Thanks
    Tags: None
  • Markiyan
    Senior Member
    • Sep 2010
    • 126
    #2
    Please use latest consed.

    Which version of the consed you are using?

    Please use version 19. This problem happens on the consed versions 16 and before.

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