Hi, i have chip-seq data from an isogenic cell model where i am looking to determine which peaks overlap between various data-sets and also what the changes in fold enrichment are between them. I have considered using bedtools intersect to determine overlaping peaks but how can i determine the difference in fold enrichment, many peaks share location but differ in enrichment. This is for TF chip.
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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