Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • jnfass
    Member
    • Aug 2008
    • 88

    #1

    Galaxy vs. UCSC Genome Browser Table Queries?

    Simple (heh) question ...:
    What, specifically, can Galaxy do that you absolutely cannot do with the UCSC Genome Browser's Table Queries?

    I'm sure that the answer is a non-empty set ... I just don't know what's in it.
    Thanks,
    ~Joe
  • steven
    Senior Member
    • Aug 2009
    • 269

    #2
    upload and align reads?

    Comment

    • jnfass
      Member
      • Aug 2008
      • 88

      #3
      That's good -- I hadn't looked at their tools in a while, and it's expanded quite a bit. Thank you for prompting me to dig through the tools again.

      But I was thinking more about (and should have specified) the interval operations ... you can do some complex inversion, subtraction, overlap, etc., in Table Queries, and then create custom tracks from those and then operate on those custom tracks (or am I wrong and the Table-Query-generated custom track gets replaced by subsequent queries?). Does that fully duplicate what Galaxy can do?

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM
      • SEQadmin2
        New Genomics Technologies Take Aim at Long-Standing Limits
        by SEQadmin2


        Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

        We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
        ...
        09-28-2026, 10:25 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      27 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      20 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-15-2026, 10:52 AM
      0 responses
      36 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-14-2026, 05:39 AM
      0 responses
      43 views
      0 reactions
      Last Post SEQadmin2  
      Working...