Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • nath223
    Junior Member
    • Mar 2011
    • 2

    #1

    SOLiD server always put the jon in Q instead of run

    hello!

    For the color space data, I submitted a job on lifescope server. Our server contains 4 nodes. The job shows no error message when I checked on the lifescope server. However, when I check the status of jobs using qstat it shows the following:

    Job ID Name User Time Use S Queue
    ------------------------- ---------------- --------------- -------- - -----
    67971.scyld ...tor_lifescope auswertung 0 C ls_primary
    67972.scyld ...tor_lifescope auswertung 0 C ls_primary
    67973.scyld ...age_lifescope auswertung 0 C ls_primary
    67974.scyld ...nts_lifescope auswertung 0 C ls_primary
    67975.scyld ...age_lifescope auswertung 0 C ls_primary
    67976.scyld ...nts_lifescope auswertung 0 C ls_primary
    67977.scyld ...age_lifescope auswertung 0 Q ls_primary
    67978.scyld ...nts_lifescope auswertung 0 Q ls_primary

    The example file that I am running is should take only 3 hours to complete but in this case it run for 24 hours whithout any progress. I am new to understand the queued process of the server. Any suggestion for this problem?
  • westerman
    Rick Westerman
    • Jun 2008
    • 1104

    #2
    Talk to one of your system admins not to us.

    Comment

    • colindaven
      Senior Member
      • Oct 2008
      • 417

      #3
      In my experience the workers in the SOLiD cluster we had tend to go down a lot. Perhaps check they are running ? Like Rick said, talking to those responsible locally sounds like a good idea.

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM
      • SEQadmin2
        New Genomics Technologies Take Aim at Long-Standing Limits
        by SEQadmin2


        Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

        We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
        ...
        09-28-2026, 10:25 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      27 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      20 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-15-2026, 10:52 AM
      0 responses
      36 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-14-2026, 05:39 AM
      0 responses
      43 views
      0 reactions
      Last Post SEQadmin2  
      Working...