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  • watermelon1037
    Junior Member
    • Apr 2016
    • 2
    #1

    gold standard for human genome INDEL calling

    Hi all!
    I am evaluating the performance of our INDEL calling tool and comparing with others.I am using the INDELs dataset identified by Ryan Mills et al.( doi:10.1101/gr.115907.110) as the gold standard. However, I only found one available vcf file of the gold standard,"Mills_and_1000G_gold_standard.indels.b37.sites.vcf". But it seems this vcf file does not contain samples' GT field (according to the paper, they used 79 human genome samples from 1k human genome project).
    Do you know is there any other version of vcf file showing each sample's GT info?

    Thanks!

    Cathy
    Tags: 1k human genome, dataset, genotyping, indel
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