Has anyone ever looked at a GFF to find all the genes that have base overlaps ?
These genes can be counted a 0 in HTSeq and Arabidopsis is a dense genome, so I was wondering if anyone has done this before, or if they have done so with another genome and have some coding tips.
Genes will overlap with themselves, and I want to avoid that, and genes will also overlap with the chromosome they are located on and I want to avoid that as well. Just wondering if there anything out there already with this information, or if there were some computational tools that would be helpful.
These genes can be counted a 0 in HTSeq and Arabidopsis is a dense genome, so I was wondering if anyone has done this before, or if they have done so with another genome and have some coding tips.
Genes will overlap with themselves, and I want to avoid that, and genes will also overlap with the chromosome they are located on and I want to avoid that as well. Just wondering if there anything out there already with this information, or if there were some computational tools that would be helpful.