Hi,
I have been aligning sequences to a small subset of hg19 as the project is a custom amplicon.
Is there any tool for converting the bam files aligned to the custom genome to the full hg19?
I guess I could create a custom liftover chain file and then use crossmap to liftover.
Has anyone else done this or similar?
Cheers
I have been aligning sequences to a small subset of hg19 as the project is a custom amplicon.
Is there any tool for converting the bam files aligned to the custom genome to the full hg19?
I guess I could create a custom liftover chain file and then use crossmap to liftover.
Has anyone else done this or similar?
Cheers
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