Does anyone knows if there is any good and accurate miRNA and siRNA prediction tool?
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I remember from journal club that many, many such tools exist, with different quality and performance. Perhaps use more than one and compare the results of analysing a (large) test set. -
Hi,
You can try miRDeep or miRTrap . Can you explain a little bit more your question ( what type of data,..)
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Can you also indicate your species? There are tools designed for plants or animals and some that might work on both.
I use the UEA sRNA toolkit a lot and thinks it's a great resource. Their mirCat tool does de novo miRNA identification. miRDeep is also worth a look.Comment
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