usearch memory problem

[JamesSeward]

Hello all,

I am currently trying to run derep_fulllength with my combined_seqs.fna file, and I'm getting this memory error:

derepfull.cpp(34): Out of memory, mymalloc(9973772, 4), curr 8.9e+08 bytes, total 9.29e+08 (929Mb)

would anyone know a way around this besides buying the 64 bit version?

Thanks in advance for any help.

James

[GenoMax]

Are you deduplicating a set of sequences?

There is also vsearch which is a free option for 64-bit instead of usearch.

[JamesSeward]

Are you deduplicating a set of sequences?

There is also vsearch which is a free option for 64-bit instead of usearch.

GenoMax,

Thank you very much, I just tried it with vsearch and that seemed to have solved my problem!

Thank you again,

James