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  • JamesSeward
    Member
    • Jul 2016
    • 11
    #1

    usearch memory problem

    Hello all,

    I am currently trying to run derep_fulllength with my combined_seqs.fna file, and I'm getting this memory error:

    derepfull.cpp(34): Out of memory, mymalloc(9973772, 4), curr 8.9e+08 bytes, total 9.29e+08 (929Mb)

    would anyone know a way around this besides buying the 64 bit version?

    Thanks in advance for any help.

    James
    Tags: None
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #2
    Are you deduplicating a set of sequences?

    There is also vsearch which is a free option for 64-bit instead of usearch.

    Comment

    • JamesSeward
      Member
      • Jul 2016
      • 11
      #3
      Originally posted by GenoMax View Post
      Are you deduplicating a set of sequences?

      There is also vsearch which is a free option for 64-bit instead of usearch.
      GenoMax,

      Thank you very much, I just tried it with vsearch and that seemed to have solved my problem!

      Thank you again,

      James

      Comment

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