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  • JamesSeward
    replied
    Originally posted by GenoMax View Post
    Are you deduplicating a set of sequences?

    There is also vsearch which is a free option for 64-bit instead of usearch.
    GenoMax,

    Thank you very much, I just tried it with vsearch and that seemed to have solved my problem!

    Thank you again,

    James

    Leave a comment:

  • GenoMax
    replied
    Are you deduplicating a set of sequences?

    There is also vsearch which is a free option for 64-bit instead of usearch.

    Leave a comment:

  • JamesSeward
    started a topic usearch memory problem

    usearch memory problem

    Hello all,

    I am currently trying to run derep_fulllength with my combined_seqs.fna file, and I'm getting this memory error:

    derepfull.cpp(34): Out of memory, mymalloc(9973772, 4), curr 8.9e+08 bytes, total 9.29e+08 (929Mb)

    would anyone know a way around this besides buying the 64 bit version?

    Thanks in advance for any help.

    James
    Tags: None
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