break genome in 44bp reads

[fadista]

Hi,

I would like to know if anyone has a perl or python script to break a genome sequence into 44-bp reads (sliding window of 1bp) in fasta format. Thanks in advance.

[maasha]

This can be done with Biopieces (www.biopieces.org)

read_fasta -i test.fna | split_seq -w 44 | write_fasta -o test_split.fna -x

Cheers,


Martin