Hi,
I am unable to go beyond the Solexa pipeline on paired end data. The data is 72 cycles of images in a single folder (36 x 2). I am not really sure of what the config.txt file should be!
Any ideas?
$ cat config.txt
ANALYSIS sequence_pair
USE_BASES Y35n,Y35n
SEQUENCE_FORMAT --fastq
ELAND_MULTIPLE_INSTANCES 6
This one says:
Found 1 reads.
Read 1: length 72.
Overriding lengths using option 72.
Error: Too many reads specified in USE_BASES=Y35n,Y35n.
Removing temporary file /tmp/tmp-GERALD-4440-4807.txt
Error: ../Gerald/GERALD.pl (/data3/Solexa2/Vasatzis/111408_30J7KAAXX_300164_20/Data/config.txt) returned error code 2
Error: Failed to process Gerald configuration.
I am unable to go beyond the Solexa pipeline on paired end data. The data is 72 cycles of images in a single folder (36 x 2). I am not really sure of what the config.txt file should be!
Any ideas?
$ cat config.txt
ANALYSIS sequence_pair
USE_BASES Y35n,Y35n
SEQUENCE_FORMAT --fastq
ELAND_MULTIPLE_INSTANCES 6
This one says:
Found 1 reads.
Read 1: length 72.
Overriding lengths using option 72.
Error: Too many reads specified in USE_BASES=Y35n,Y35n.
Removing temporary file /tmp/tmp-GERALD-4440-4807.txt
Error: ../Gerald/GERALD.pl (/data3/Solexa2/Vasatzis/111408_30J7KAAXX_300164_20/Data/config.txt) returned error code 2
Error: Failed to process Gerald configuration.
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