Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    Memory efficient MEM-finding with supporting unique MEM

    Hello, everyone.

    There are several tools (based on MUMmer) for finding MEM (Maximal Exact Matches) with RAM usage optimization (sparseMEM, slaMEM, essaMEM, E-MEM, backwardMEM), but I can't find the appropriate software with supporting memory usage optimization and unique MEM finding simultaneously. Or no memory optimization (MUMmer), or no unique MEM finding (E-MEM), or no support memory reducing in unique-MEM mode (essaMEM).

    Can anyone recommended software with required functionality or I have to write the interpretation script for finding maximal unique MEM around all founded MEMs ?
    Tags: mem, memory, ngs
Previous template Next

Latest Articles

Collapse
  • seqadmin
    Recent Developments in Metagenomics
    by seqadmin





    Metagenomics has improved the way researchers study microorganisms across diverse environments. Historically, studying microorganisms relied on culturing them in the lab, a method that limits the investigation of many species since most are unculturable1. Metagenomics overcomes these issues by allowing the study of microorganisms regardless of their ability to be cultured or the environments they inhabit. Over time, the field has evolved, especially with the advent...
    09-23-2024, 06:35 AM
  • seqadmin
    Understanding Genetic Influence on Infectious Disease
    by seqadmin




    During the COVID-19 pandemic, scientists observed that while some individuals experienced severe illness when infected with SARS-CoV-2, others were barely affected. These disparities left researchers and clinicians wondering what causes the wide variations in response to viral infections and what role genetics plays.

    Jean-Laurent Casanova, M.D., Ph.D., Professor at Rockefeller University, is a leading expert in this crossover between genetics and infectious...
    09-09-2024, 10:59 AM
View All

ad_right_rmr

Collapse

News

Collapse
Topics Statistics Last Post
Mechanical Forces in DNA Transcription Uncovered by Clemson Researchers by seqadmin
Started by seqadmin, 10-02-2024, 04:51 AM
0 responses
13 views
0 likes
 Last Post seqadmin
by seqadmin
10-02-2024, 04:51 AM  
New Epigenetic Clock Links Cheek Cells to Mortality Risk by seqadmin
Started by seqadmin, 10-01-2024, 07:10 AM
0 responses
21 views
0 likes
 Last Post seqadmin
by seqadmin
10-01-2024, 07:10 AM  
AI-Powered Blood Test Shows Promise for Early Ovarian Cancer Detection by seqadmin
Started by seqadmin, 09-30-2024, 08:33 AM
0 responses
25 views
0 likes
 Last Post seqadmin
by seqadmin
09-30-2024, 08:33 AM  
Stem Cell Research Suggests Human Cells May Enter Developmental Pause by seqadmin
Started by seqadmin, 09-26-2024, 12:57 PM
0 responses
18 views
0 likes
 Last Post seqadmin
by seqadmin
09-26-2024, 12:57 PM  
View All
Working...
X