Hi all,
I am trying to use cuffcompare (v0.9.2Beta) to compare my rebuilt transcriptome with UCSC known gene annotations. However, I got the error messages though I did obtain the combined.gtf and .tracking files eventually. Any explainations?
Thank you.
GFF Warning: discarded overlapping feature segment (40547903-40548425) for GFF ID uc007aug.1
.....
Warning: transcript uc008hap.1 discarded (structural errors found, length=261032).
Warning: found 10930 transcripts with undetermined strand.
Warning: found 139706 transcripts with undetermined strand.
I am trying to use cuffcompare (v0.9.2Beta) to compare my rebuilt transcriptome with UCSC known gene annotations. However, I got the error messages though I did obtain the combined.gtf and .tracking files eventually. Any explainations?
Thank you.
GFF Warning: discarded overlapping feature segment (40547903-40548425) for GFF ID uc007aug.1
.....
Warning: transcript uc008hap.1 discarded (structural errors found, length=261032).
Warning: found 10930 transcripts with undetermined strand.
Warning: found 139706 transcripts with undetermined strand.
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