New Tools to analyze Next Gen Seq data
Dear all,
I'm currently using GATK and Samtools to analyze some NGS data from the 1000genomes project.
However I'm having some difficulties in understanding what I can do with the recalibrated VCF file!
I recently saw that VCFtools can be used to perform some pop genetic studies on this type of data, but I'm not sure if this is the best way to go.
(I'm a newbie on this type of analysis...)
Do you have any idea of other software that I can use to perform some population genetic analysis on my data?
Do you think that VCFtools is a good software to do this?
Thank you all in advance.
All the best,
JMFA
I'm currently using GATK and Samtools to analyze some NGS data from the 1000genomes project.
However I'm having some difficulties in understanding what I can do with the recalibrated VCF file!
I recently saw that VCFtools can be used to perform some pop genetic studies on this type of data, but I'm not sure if this is the best way to go.
(I'm a newbie on this type of analysis...)
Do you have any idea of other software that I can use to perform some population genetic analysis on my data?
Do you think that VCFtools is a good software to do this?
Thank you all in advance.
All the best,
JMFA