Hi everyone,
I'm trying to convert my baf files to bam, because i want to use dindel.
So i use bfast to convert from baf to sam and samtools from sam to bam, but it failed at the bfast step...
If someone knows a better tools or can help me.
here my command line:
The error:
I hav the right on all files...
Thanks guys.
I'm trying to convert my baf files to bam, because i want to use dindel.
So i use bfast to convert from baf to sam and samtools from sam to bam, but it failed at the bfast step...
If someone knows a better tools or can help me.
here my command line:
Code:
bfast bafconvert -O 4 -f /path_to/hg37all.fa files.baf
Code:
************************************************************ Reading in reference genome from /path_to/hg37all.fa.nt.brg. In total read 26 contigs for a total of 3080452622 bases ************************************************************ ************************************************************ In function "readInReadGroup": Fatal Error[OpenFileError]. Message: Could not open file for reading. The file stream error was:: Bad address ***** Exiting due to errors ***** ************************************************************
Thanks guys.
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