I have aligned reads to a database containing 10 reference sequences using BWA MEM, and now have .sam and .bam files.
Is there a program that would allow me to few those 10 alignments within the one .sam/.bam file all at once?
I am currently using Tablet, but this only allows me to view the alignment for each reference sequence one at a time.
Alternatively, is there a program that would allow me to view multiple .sam/.bam files at once, when each of those .sam/.bam files have only 1 reference sequence?
I'm sorry if this question has been answered before but I couldn't find a post that answered this for me.
Thank you for your help.
Is there a program that would allow me to few those 10 alignments within the one .sam/.bam file all at once?
I am currently using Tablet, but this only allows me to view the alignment for each reference sequence one at a time.
Alternatively, is there a program that would allow me to view multiple .sam/.bam files at once, when each of those .sam/.bam files have only 1 reference sequence?
I'm sorry if this question has been answered before but I couldn't find a post that answered this for me.
Thank you for your help.
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