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  • fripeki
    Junior Member
    • Apr 2019
    • 5
    #1

    Repeatscout output

    hello. I'm using repeatscout. can anyone help me explaining how to read the result produced by the command:
    build_lmer_table?
    It is not clear to me what does it mean this kind of result:
    AAAAAAAAGCGGGA 3 107776875
    AAAAAAAATACCCG 4 75256214
    CATACATATGTATG 155 121820972
    AATTCAATTGAATT 12 125164377
    AAAAAAACGTAGAC 9 116691109
    ATTCAAGGCTTGAA 13 124791730
    AATTCAATCATGCA 3 116945308
    AAAAAAACTGTATG 10 83440519
    AAAAAAAAGGCGTA 3 41037187
    AAAAAAACTTGAAT 7 94493612
    CATACATGCATGCA 1065 125671338
    CATACATGCTTGAA 7 121799834
    AAAAAAATCATGCA 10 95493021
    AAAAAAAGTCCAGT 3 125127980
    AATTCACATGTATG 7 102505668
    AAAAAAAGGGGCTC 3 10107773
    AATTCAAGCTTGAA 3 33672150
    AAAAAAATGTCCAG 6 95501149
    AAAAAAAGCTTGAA 7 117285183
    ATTCAATATGTATG 5 70104562
    ...

    Thank you
    Tags: repeat element, repeat masker, repeatscout
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