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  • lasantos
    Junior Member
    • Jun 2019
    • 2
    #1

    Question: Not-Merged Reads What to do?

    Hey guys,
    So I'm working with pair-end data and I'm concerning regarding the merged/not-merged reads. I'm currently merging them using PEAR and QIIME 2, but I would not like to discard those not merged reads. Should I treat them as "single-end"-like reads? Or it is best to discard them? I'm worried I'll loose too much information if I simply discard not-merged reads.
    Thank you.
    Tags: merging, reads, wgs
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