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  • UMI-tools running error- help needed :)

    Hi everyone,

    I am trying to work with UMI-tools. After installation, I tried to follow the example they provide.

    After executing this command:

    umi_tools extract --stdin=example.fastq.gz --bc-pattern=NNNNNNNNN --log=processed.log --stdout processed.fastq.gz

    I encountered this error:

    Traceback (most recent call last):
    File "/usr/local/bin/umi_tools", line 5, in <module>
    from pkg_resources import load_entry_point
    File "<frozen importlib._bootstrap>", line 2237, in _find_and_load
    File "<frozen importlib._bootstrap>", line 2226, in _find_and_load_unlocked
    File "<frozen importlib._bootstrap>", line 1191, in _load_unlocked
    File "<frozen importlib._bootstrap>", line 1161, in _load_backward_compatible
    File "/usr/local/lib/python3.4/dist-packages/setuptools-10.0-py3.4.egg/pkg_resources/__init__.py", line 2957, in <module>
    File "/usr/local/lib/python3.4/dist-packages/setuptools-10.0-py3.4.egg/pkg_resources/__init__.py", line 567, in _build_master
    File "/usr/local/lib/python3.4/dist-packages/setuptools-10.0-py3.4.egg/pkg_resources/__init__.py", line 876, in require
    File "/usr/local/lib/python3.4/dist-packages/setuptools-10.0-py3.4.egg/pkg_resources/__init__.py", line 761, in resolve
    pkg_resources.DistributionNotFound: matplotlib

    Nevertheless, matplotlib is installed on our server, and according to pip it is updated. Did anyone else encountered this problem or has any ideas for a solution?

    Thank you so much.
    Best,
    Sapir

  • #2
    Problem solved.

    Comment

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