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ERCC spike-in analysis with python?
Hi!
I have the expression data for RNA samples to which I added ERCC spike-Ins.
I want to do a preliminary analysis*, and I was wondering if there is a python package for that. I found an R package, but I'm much more flaunt in python.
(Just the basics: to see if the expected concentrations of spike-Ins is linear with the the coverage in my data, and also I want to check if the fold change between Mix1 and Mix2 between two samples is as expected).
Thanks!
I have the expression data for RNA samples to which I added ERCC spike-Ins.
I want to do a preliminary analysis*, and I was wondering if there is a python package for that. I found an R package, but I'm much more flaunt in python.
(Just the basics: to see if the expected concentrations of spike-Ins is linear with the the coverage in my data, and also I want to check if the fold change between Mix1 and Mix2 between two samples is as expected).
Thanks!