Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • bbm
    Member
    • Sep 2011
    • 38

    #1

    DEXSeq errors with the sample data

    I'm going to use DEXSeq to analyses my PE data (honeybee genome, 3 reps of controls or trt, 3 time-points).

    I tried the code for the drosophila sample data, and it showed an error in the end:

    Error in gzfile(file, "wb") : cannot open the connection
    In addition: Warning message:
    In gzfile(file, "wb") :
    cannot open compressed file '../data/pasillaDEXSeqDataSet.RData', probable reason 'No such file or directory'

    Does this mean it cannot make a plot?

    My gene expression data is from Tophat/Cuffdiff, and the splicing.diff file didn't show any hits/significance.

    I don't know how to run HTseq or python, but I'm willing to learn more if I need.

    Do I need to install python on my computer?

    Sorry about these many questions... Thank you so much if you can help me!!!!

Latest Articles

Collapse

  • SEQadmin2
    Beyond CRISPR/Cas9: Understand, Choose, and Use the Right Genome Editing Tool
    by SEQadmin2



    CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).

    Despite this, “CRISPR helped turn genome editing from a specialized technique into
    ...
    07-31-2026, 11:01 AM
  • SEQadmin2
    Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
    by SEQadmin2


    Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

    The systematic characterization of the human proteome has
    ...
    07-20-2026, 11:48 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 08-13-2026, 12:22 PM
0 responses
29 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 08-11-2026, 10:35 AM
0 responses
24 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 08-06-2026, 07:41 AM
0 responses
38 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 08-03-2026, 10:13 AM
0 responses
51 views
0 reactions
Last Post SEQadmin2  
Working...