Hello to all,
I'm currently trying to extract some reasonable data from the Bioscope pairing tool.
We have paired-end reads from a library size-selected for 200 bp.
We have not set a value for the parameters
insert.start and insert.end in the pairing.ini file.
The description in the Bioscope manual says: "The minimum(maximum) insert size to define a good mate. If a value is not set, the tool tries to measure the best value"
My question is: were can I see this value afterwards. It would be quite interesting, what measure defines a good mate/pair.
Can somebody give a hint?
Many thanks
I'm currently trying to extract some reasonable data from the Bioscope pairing tool.
We have paired-end reads from a library size-selected for 200 bp.
We have not set a value for the parameters
insert.start and insert.end in the pairing.ini file.
The description in the Bioscope manual says: "The minimum(maximum) insert size to define a good mate. If a value is not set, the tool tries to measure the best value"
My question is: were can I see this value afterwards. It would be quite interesting, what measure defines a good mate/pair.
Can somebody give a hint?
Many thanks
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